Installing BEAST. Unzip the downloaded compressed ZIP archive (currently BEAST.v10.5.0-beta5.zip). The unzipped files contain executable binaries for BEAST, BEAUti, LogCombiner, TreeAnnotator and TreeStat. Double-clicking on those files will automatically start the corresponding program. BEAGLE acceleration library BEAST can also import FASTA files (as long as the sequences have been aligned) or BEAST XML files (in which case the data will imported but the models and settings will not). Once loaded, the alignment will be displayed in the main window in a table: If you want to look at the actual alignment, double click on the row in the table. To test the installation, run BEAST and when the options dialog box appears, select “Use BEAGLE library” and “Show list of available BEAGLE resources”: The BEAGLE options available in the BEAST dialog box. You don’t need to specify a BEAST input file as the information about BEAGLE will be displayed and then BEAST will stop. BEAST is built on a large body of prior work and appropriate citations for individual modules, models and components will be listed when BEAST is run. BEAST-Users mailing list. Users are strongly advised to join the BEAST mailing-list. This will be used to announce new versions and advise users about bugs and problems. You will then run BEAST. Second Tutorial This tutorial follows directly on from the first, looking at the output of BEAST, diagnosing problems and summarising the results. This tutorial will introduce some of the utilities packaged with BEAST, logcombiner and treeannotator, as well as the external applications, Tracer and FigTree. FigTree is a program for viewing trees, including summary information produced by TreeAnnotator, and producing publication quality figures. BEAST can be downloaded from the following link: BEAST X v10.5.0-beta5 - UNIX/Linux version 46.2MB; This will download a compressed tar archive (a ‘.tgz’ file). For more information about the other options in the BEAST dialog box see this page. Analyzing the BEAST output using Tracer. To analyze the results of running BEAST we are going to use the program Tracer. The exact instructions for running Tracer differs depending on which computer you are using. Installing BEAST BEAST has been developed in Java , which allows the same code to run on any platform that has the Java software installed. We have also created packages for each of the common operating systems to provide a user-interface that is ‘native’ and familiar. Download BEAST v1.8.4 binaries for Mac, Windows and UNIX/Linux Version 1.8.4 released 17th June 2016 New Features: New structured list of citations printed to screen before running. Option ('-citation_file') to write citation list to file.
2024.11.25 07:00 jskiba Interview With The Beast
submitted by jskiba to Coffeezilla_gg [link] [comments] |
2024.11.25 07:00 AutoModerator Mégafil conseils personnalisés d'investissement - semaine du 25/11/2024
Ce mégafil regroupe toutes les demandes de conseils d'investissement, merci de ne pas créer un nouveau post juste pour un conseil d'investissement.
Quels sujets pour ce mégafil ?
2024.11.25 07:00 pukui7 S24+ for $350
I've had my s20 fe since October 2020, bought from Amazon. Previously, I'd had Pixel devices, and even a Nexus before.
My s20 fe still works fine, but the battery is starting to show its age. And $350 for a good new phone is a bargain.
I wonder though, will the S24+ from the google store be able to handle visual voicemail correctly, unlike my current s20 fe?
submitted by pukui7 to GoogleFi [link] [comments]
2024.11.25 07:00 shwifti KSHMR Single Cover art. Please help me find the credit
https://preview.redd.it/gr3pqpt9xz2e1.png?width=637&format=png&auto=webp&s=03bb38c755f3285277f435181b97f4d3a24cf1d4 submitted by shwifti to WhatIsThisPainting [link] [comments] |
2024.11.25 07:00 Serious_Current_3941 Is it possible for a 47 year old man to have a crush on a 21 year old woman?
Because why wouldn't the man see someone he is 25 years old than as a kid and not a potential love interest?
submitted by Serious_Current_3941 to NoStupidQuestions [link] [comments]
2024.11.25 07:00 -Thr0w_4w4y- Medical/caregiving workers, is this neglect? I’m new and concerned.
So this is a new career for me and I honestly think I want to quit over this. I work in home health and we have one patient in this unit. 8 hour shifts with rotating staff 24 hours of the day. I have been here over 6 months now and I have reported this staff to management but nothing is being done.
Backstory: The patient is wheelchair bound and cannot feel from the waist down. They had already had bed sores before I joined the company. They have bandages and wound vacs. There is one staff that does not change the bandages or fix the wound vac on their shift even when asked directly. I work the overnight position they work the mornings on weekends. Every single weekend when I come back the patient is in worse shape. The wounds are dirty, smelly and exposed when they should not be. I reported them so many times to management and nothing has changed. I just had a serious talk with the manager last week and not even a week later the same issues. I know the patient cannot feel the skin/wound but that doesn’t make it ok.. today the skin ripped off because they spent 16 hours with the wound on their pants… I’m about to quit my job and report this to the state because nothing is being done when I talk to the person in charge. I will have to quit because they will know I reported it since I’m the only new staff.
I’m new to the medical field and I don’t know if I am wrong or not. I’m the only staff that cleans, cooks or sanitizes anything. All other staff are men and older, I’m a female. My manager tried to offer me a position in a different home to “get a break from the boys” but that won’t change what is happening to this human being.. I don’t want to go to another home where more people are neglected and I end up doing 90% more than anyone else trying to make up for their laziness. I do not care that I do most the work, I care that the patient is being neglected and ignored. I’ve never been a mandated reporter before but I feel this qualifies. The company says to talk to management first unless it’s detrimental and I’ve tried but nothing is being done…
submitted by -Thr0w_4w4y- to careerguidance [link] [comments]
2024.11.25 07:00 brogrin Help Me Pick A Christmas Gift For My Stepdad!
Hey! bornagainteen let's ask 👉 Gift Ideas ❤️ GPT
$25-75Based on what you've shared about your stepdad, here are thoughtful, creative, and unique gift ideas that fall within your budget and avoid common pitfalls like clothes or gift cards:
So, my stepdad and I are pretty much complete opposites, and I'm really struggling to come up with gift ideas for him this year. He's a pretty average middle aged Texan dude, zero hobbies outside of watching TV and eating out. I can't to get him a gift card to a restaurant because my family said no cash or gift cards this year. He doesn't like clothes and already has enough t-shirts and denim shorts to last a lifetime. I'm completely stumped. Feel free to ask questions about him to try to come up with something he would love that won't break the bank for me.
2024.11.25 07:00 AutoModerator LUNDI'ATRIBE - 2024-11-25
SALUT LES RÂLEURS !
C'EST LUNDI ET LUNDI ÇA FAIT CHIER. VOICI LE SUJET HEBDOMADAIRE DE L'ACTIVITÉ FAVORITE DE 1 FRANÇAIS SUR 1 : RÂLER !
POUR CRÉER UNE COHÉSION DE GROUPE VOICI QUELQUES RÈGLES À RESPECTER :
2024.11.25 07:00 Working_Anxiety3864 For anyone studying in comsats plz respond.
For anyone studying in comsats, I just wanna know what is your schedule and if you live in hostel how much do you spend overall in a month. THANK U.
submitted by Working_Anxiety3864 to Comsats [link] [comments]
2024.11.25 07:00 Infinite-Whole5066 Why DeWalt?
I'm trying to figure out which ecosystem I want to be a part of. Why choose DeWalt over Milwaukee, craftsman, Bosch, Bauer, etc... Is it just the yellow color or are the tools better than the rest? I'm just a DIYer that likes to work on my car.
submitted by Infinite-Whole5066 to Dewalt [link] [comments]
2024.11.25 07:00 remote_rocketship Invoca is hiring a Senior Software Engineer - Campaigns and Attribution in the United States
submitted by remote_rocketship to RemoteSoftwareEngJobs [link] [comments] |
2024.11.25 07:00 AutoModerator Daily Discussion Thread 11/25/24
Welcome to the Daily Discussion Thread series on /smashbros! Inspired by /SSBM and /hiphopheads's DDTs, you can post here:
2024.11.25 07:00 Dull-Consequence-116 Just bought a 2018 eco-boost fastback and already having problems...
So I bought a eco-boost three days ago and I've been doing a couple pulls but nothing too terrible and I got home today parked the car and it started leaking a lot of coolant, I don't remember hitting any potholes or branches that could've damaged it so this just baffles me. Has anybody else had this experience and where should I look at to find the issue?
submitted by Dull-Consequence-116 to ecoboostmustang [link] [comments]
2024.11.25 07:00 playdoh_licker Bun on PC demands attention
submitted by playdoh_licker to aww [link] [comments] |
2024.11.25 07:00 Quantum_Quasar_22 Taxi and cab
Hi, I'm coming to Bhopal for an institute's interview and it seems there's no uber. Is there a local taxi service that is good and reliable? The hotel recommended taxi is asking 1000 rs for 16 kms. Please let me know what's the better option.
submitted by Quantum_Quasar_22 to Bhopal [link] [comments]
2024.11.25 07:00 AutoModerator Monday Daily Questions (Newbie Friendly) - Nov 25, 2024
This is the place to ask beginner and simple questions. Some examples include:
2024.11.25 07:00 AutoModerator Monday Mail Call and Show-and-Tell - Nov 25, 2024
This is a thread to share those new purchases you're excited to show off, the shave-related projects you've been working on, or just some neat thing from your shave den.
Show everyone what you got!
submitted by AutoModerator to Wetshaving [link] [comments]
2024.11.25 07:00 Brilliant_Scholar_84 Enviro Infra Engineers IPO - Thoughts?
The current GMP of the Enviro Infra Engineers is Rs 53. Apply or skip?
submitted by Brilliant_Scholar_84 to IndianStockMarket [link] [comments]
2024.11.25 07:00 JokeOfEverything Anyone else wish they would tidy up the Dota universe a bit so we can get stories like Arcane
I know it being all over the place is kind of the point, like the chaos and randomness is part of the lore, but it feels like it doesn't take itself seriously which makes it hard to love for me personally
submitted by JokeOfEverything to DotA2 [link] [comments]
2024.11.25 07:00 Kitchen-Ad-8758 Drink with a view
submitted by Kitchen-Ad-8758 to drinkswithaview [link] [comments] |
2024.11.25 07:00 AutoModerator Monday SOTD Thread - Nov 25, 2024
Share your shave of the day for Monday!
submitted by AutoModerator to Wetshaving [link] [comments]
2024.11.25 07:00 No_Zebra_3607 26 years old with scarily bad memory
So I’m a 26 year old guy with atrocious memory. I’ve know I have a bad memory for a while, initially it presented itself as an inability to retain people’s names, mostly new acquaintances but also occasionally not being able to recall the names of long time friends. As I’ve gotten older it presents itself in a number of shocking ways.
I hear friends and family talk about their memories of growing up, their childhood, school years, etc. To me everything before high school is pretty much non existent. I have a select few memories from high school and college but it’s more like snapshots of very specific things that happened. It seems like most people my age can recall basically their entire high school and college experience no issue, to me I feel like I’m grasping at a few vague memories. Nowadays my girlfriend is constantly commenting on my bad memory. And not just in a ‘you never listen’ sort of way- in that I can’t recall very basic things. Example: I mentioned to her the other day that we didn’t go to a baseball game this year kind of a bummer. She said what are you talking about we went to a game this summer with my parents. I had 0 recollection of it and it wasn’t until she pulled up since pictures we took at the game that I was fully convinced we went.
Some medical history. I like to believe I’m healthy for someone in their 20s, not overweight, I eat & sleep all, and exercise. I suffer from migraines occasionally, not sure if they’re related. In my college years I did drink excessively, nowadays I drink a moderate amount. Pretty much only on the weekends maybe 3 or 4 beers or a couple whiskeys in the evening that sort of thing. My grandad does have Alzheimer’s. Having seen what that disease has done to him I’m terrified it could be in my future. Honestly I’m just really scared that my memory is this bad in my 20s. Hoping someone out there might have some insight or have experience dealing with something similar.
Thanks for your help!
submitted by No_Zebra_3607 to AskDocs [link] [comments]
2024.11.25 07:00 TemporaryCitron9271 🔥 Even Vitalik Called It: ZK-SNARKs Are Revolutionary - Here's Why Mina Protocol Is Leading The Charge
Remember when Vitalik Buterin called ZK-SNARKs a "significant revolution"?
Source - https://x.com/vitalikbuterin/status/1433228277263462401?s=46&t=wlERG8LZlV_SSuhnWFBEjw
What Makes It Mind-Blowing?
Imagine a blockchain that's just 22kb - literally the size of a few tweets - yet maintains full security and decentralization. That's what Mina achieved using ZK-SNARKs. It's like compressing an entire blockchain into a tiny proof while keeping all the good stuff!
The Tech Magic
Mina uses recursive ZK-SNARKs to do something incredible:
- Verify transactions in just 200 milliseconds
- Keep the blockchain size constant regardless of transaction volume
- Allow anyone to run a full node on a smartphone, fridge or whatever you want
Why This Matters
Traditional blockchains like Bitcoin and Ethereum keep growing larger, requiring more storage and processing power. Mina flips this model on its head by using ZK-SNARKs to compress the entire chain into a tiny proof. This means:
True Decentralization: No need for expensive hardware - anyone can participate
Privacy & Security: Data stays on your device, only proofs go on-chain
Scalability: The network maintains its tiny size no matter how many transactions occur
Vitalik was right - this is revolutionary tech that's solving the blockchain trilemma. Mina isn't just implementing ZK-SNARKs; they're taking them to the next level with recursion and making crypto truly accessible to everyone.
submitted by TemporaryCitron9271 to CryptoMarkets [link] [comments]
2024.11.25 07:00 tufyufyu What are some disses Kendrick could throw at Wayne?
I love Wayne but I’m just curious. Let’s say it escalates with Wayne(I doubt it will). Knowing Kendrick, what are some things you think he would say
submitted by tufyufyu to KendrickLamar [link] [comments]
2024.11.25 07:00 AutoModerator Making Friends Monday! Share your game tags here!
Use this post to look for new friends to game with! Share your gamer tag & platform, and meet new people!
This thread is posted weekly on Mondays (adjustments made as needed).
submitted by AutoModerator to gaming [link] [comments]