deseq2 - Equal number of up and down regulated genes, plus zero outliers and zero low counts

2024.11.28 09:50 Remarkable-Rub-6151 deseq2 - Equal number of up and down regulated genes, plus zero outliers and zero low counts

Hello everyone, I am working on differential expression analysis for Multiformis using DESeq2. However, I encounter a strange summary after running the res function. Can someone explain whether this is normal or if there might be an issue with the preprocessing of my RNA-seq data?

out of 2804 with nonzero total read count adjusted p-value < 0.1 LFC > 0 (up) : 788, 28% LFC < 0 (down) : 788, 28% outliers [1] : 0, 0% low counts [2] : 0, 0% (mean count < 0) [1] see 'cooksCutoff' argument of ?results [2] see 'independentFiltering' argument of ?results 
And when I used this command summary(res_all_times, alpha=.0001) I got this:
out of 2804 with nonzero total read count adjusted p-value < 1e-04 LFC > 0 (up) : 318, 11% LFC < 0 (down) : 260, 9.3% outliers [1] : 0, 0% low counts [2] : 0, 0% (mean count < 0) [1] see 'cooksCutoff' argument of ?results [2] see 'independentFiltering' argument of ?results 
Also, could you explain me what mean count < 0 does it mean?
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2024.11.28 09:50 mountaincat80 I’m in an overthinking spiral and need some clarity, I can’t tell whether she likes me or not

Been on 3 dates with a girl who lives about 1 hour away. First two were just getting to know each other, 2nd date got cut short because I had a family emergency. On the 3rd we spent a long time together and held hands at the end of the night and then I dropped her home. We text everyday.
She’s a bit passive, but responds quickly and proactively. When we were holding hands, she seemed really into it and got close to me. Asked her out on a 4th and she said yes.
The issue is that when I asked her out, I said we should spend a full day together, but on Saturday she said she has plans in the evening, so it’ll have to end before that, and on Sunday she’s going on a trip in the morning so we can meet after (she’ll be in my area so it’s convenient).
There’s nothing obviously wrong here, but this doesn’t give me the opportunity to physically escalate. We live in a conservative country and can’t kiss in a public place. Also I live with my family, which she knows, and can’t bring her to my place. Could she be dating other people? Would she agree to a 4th date if she’s on the fence? Is it okay if I say something like, “I mean, seeing you both days doesn’t sound like a bad idea to me?” If not, does Saturday or Sunday make more sense?
Something that really throws me off in dating is that we tend to perceive the same things differently, for me handholding is highly intimate, but for her it could be meaningless. How do you perceive handholding? Would you hold hands with someone you’re not interested in? On this sub I hear stories of people making out on dates and then ending things or ghosting a day later, do people just accept physical attention because it would be awkward not or just to explore?
Another example of this is a first date where the girl sensed strong mutual attraction but I felt none, even though the date went well. Nothing physical happened. After the date I was upfront but she was hurt and confused, and asked her friends to follow up on why I ended things.
I understand her frustration, serious dating is emotionally taxing. Going on multiple dates, waiting for the right moment, summoning up the courage to make a move and spending all that time and money is emotionally exhausting when there’s no pay off in the end. It’s so discouraging that things can just fail after all this effort.
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2024.11.28 09:50 OcchiTheBoss Se avete bisogno di tavoli scrivetemi

Se avete bisogno di tavoli scrivetemi submitted by OcchiTheBoss to torino [link] [comments]


2024.11.28 09:50 KorolEz Lohnkürzungen Industrie

Lohnkürzungen Industrie https://kurier.at/wirtschaft/voest-chef-eibensteiner-runter-mit-den-arbeitskosten/402981021
Einmal möchte ich erleben, das Führungskräfte führen und mit gutem Beispiel vorangehen und ihr eigenes Gehalt zuerst kürzen. Dann würde ich ihnen sogar ein bisschen glauben, dass es ihnen um das Wohl der Firma und nicht nur um den eigenen Bonus geht.
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2024.11.28 09:50 SmallAchiever These are looking like parody posters

These are looking like parody posters submitted by SmallAchiever to BollyBlindsNGossip [link] [comments]


2024.11.28 09:50 ElectricalDisaster4 Get up to an extra $2000 off your new Tesla

looking to buy a Model 3 or Y use my referral link and get $1,000 off. Want the Cyber truck or model X is S get $2,000 off with my link. Combine that with 0% APR and $7,500 EV tax credit you're looking at tremendous savings. Also Tesla is giving you 3 months of free supercharging and 3 months of FSD. I bought my MYP in May and I'm loving it.
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2024.11.28 09:50 sspidernoir What figure(s) are you thankful for?

For me it's the Mezco Doctor Doom. I got the figure as a birthday gift from my parents. Alongside that it was a grail of mine ever since it was announced - for the longest time I had made a cardboard cutout which was to scale with the rest of my figures and surprisingly worked till I got the actual figure. Till this very day I have the cutout as a Doombot behind the actual figure! What figure are you thankful for?
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2024.11.28 09:50 radley8367 Moving into a bigger people leader position from next year

Finally got a promotion! Been in my current role for a few years so was a huge win
I’ve only ever managed one person at a time and I’m now jumping up to 5 direct reports.
Any advice? If you’ve been in a similar position, how did you manage the jump to multiple DRs?
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2024.11.28 09:50 BR4NFRY3 How is there not a successful major D&D MMORPG? What game comes close?

My main
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2024.11.28 09:50 TheMelodyBar Looking for a YouTube Creator group

I’m launching a YouTube channel called Melody Bar on 1st December, focused on beginner guitar tips, gear, and music lessons.
I have read The YouTube Formula and he suggests forming a group of creators to bounce ideas off. Is there anyone who would like to form a group with me?
https://www.youtube.com/channel/UCmhuCwtRifSl4ouDrY0afZg?sub_confirmation=1
submitted by TheMelodyBar to YouTubeCreators [link] [comments]


2024.11.28 09:50 g0thc0wg1rl Will terains still be available in complete?

I’m trying to choose layouts for my final campsite and when i browsed the terrains, i wanted to see if i could still buy different ones later on? Or do i have to do it before the game ends?
submitted by g0thc0wg1rl to ACPocketCamp [link] [comments]


2024.11.28 09:50 Screptile27 Add me :) 717653019253

.
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2024.11.28 09:50 kitsune_grrrl80 Finally and I love it ♥️🔥🐲

Finally and I love it ♥️🔥🐲 MC outfit is fabulous btw 🥹
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2024.11.28 09:50 SoonerStew What is this?

What is this? Picked up this block this morning and it has a separate pickup at a completely different station scheduled for tomorrow. What am I supposed to do?
submitted by SoonerStew to AmazonFlexDrivers [link] [comments]


2024.11.28 09:50 Flamedragon1175 BB Deal Vs Current Rig( 2080S, R5 3600)

BB Deal Vs Current Rig( 2080S, R5 3600) Been thinking about building/getting a new rig for awhile now and just wanted to know if the BB deal would be a big enough upgrade from my current rig or if I should just wait till next year and build one with the 500 series if I'm lucky enough to get one.
submitted by Flamedragon1175 to Prebuilts [link] [comments]


2024.11.28 09:50 AntBurnsRubberTTV Need help

submitted by AntBurnsRubberTTV to ForzaHorizon5 [link] [comments]


2024.11.28 09:50 Existing-Run462 What is one battle you would love to see?!?Mine is:

What is one battle you would love to see?!?Mine is: submitted by Existing-Run462 to lookismcomic [link] [comments]


2024.11.28 09:50 charlidoodlez SMILEY AS ISABELLE!!!!!!!!

SMILEY AS ISABELLE!!!!!!!! I LOVE DRAWINF HER I DOODLE HER EVERY DAY IN SCHOOL SHE ALSO LOOKS LIKE CINNA MIKU LOL
submitted by charlidoodlez to riddleschool [link] [comments]


2024.11.28 09:50 PrasParadise I suddenly get extremely tired/sleepy

15M, 50kg weight, 5'6 height, non smoker, non drinker, I have not been diagnosed with any conditions before.
I don't know wtf is happening. It started happening about a month ago. Around 1 and half week before that I had taken a blood test and according to the blood test, everything is fine(I went to a doctor to see if I have ADHD and the doctor told me to take a blood test. She said that I didn't have ADHD, if anything, I have mobile addiction). So anyways, these days I will suddenly start feeling sleepy at random moments and it isn't light sleep as well. It's the sleep you get after pulling an all nigher, your eyes will become heavy rendering you unable to study. This is an incident that has been happening everyday for about one month. I will suddenly be bit with this heavy need for sleep and I won't be able to do anything. Although sleep is fine but the timing is fucked up. I have my finals in 1 month. If I fail it, my entire 12 fucking years of life will be in vain(I'm from India, our education system might be different than yours). Please help. Idk what the fucks wrong with me.
Ps. This info might be helpful so I used to pull a lot of all nighers before and could easily survive on 4-6 hours of sleep. I usually only got 5 hours of sleep. But nowadays I'm getting like 10-12 hours of sleep. I don't want it tho. This is definitely not normal for me
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2024.11.28 09:50 honeyCrisis M5Stack Core2 Audio Monitor improved

M5Stack Core2 Audio Monitor improved I found this neat little project on the web.
Core2 Audio Monitor
Original code (not mine): https://github.com/atomic14/m5stack-core2-audio-monitor
It uses TFT_eSPI via the M5Stack Core 2 lib. Unfortunately it runs at about 12 frames a second, only runs under Arduino, not the ESP-IDF, requires PSRAM when it doesn't really need it, and it's kind of flickery.
So what I did is I ported the project to use htcw_gfx 2.0 and htcw_uix 1.0 - my graphics and user interface libraries.
Now I get 30 FPS on the main EQ spectrum analyzer screen, and 21 FPS on the scrolling bitmap spectrum analyzer screen. That's on average of about double the throughput, and pretty close to the max speed the SPI/LCD hardware can operate at.
Now it doesn't flicker
Now it doesn't require PSRAM.
Now it supports both Arduino and the ESP IDF.
It also gets rid of all the compiler warnings from the original code
https://github.com/codewitch-honey-crisis/core2-audio-monitor
submitted by honeyCrisis to esp32 [link] [comments]


2024.11.28 09:50 YESimaMASSHOLE One of 5 very tiny shop cats!

One of 5 very tiny shop cats! Look at her mascara!!!
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2024.11.28 09:50 GXibra What is this?

This post contains content not supported on old Reddit. Click here to view the full post
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2024.11.28 09:50 Expensive_Count2203 Brown bleeding

Hey All! I’ve been on birth control for several years now due to debilitating period pains Over the past 4 years I’ve been experiencing dark brown bleeding a week and a half to two weeks before my pill break. Been on several different pill types, the coil, and the bar to try to combat the issue. Has anyone experienced this and any advice? Currently on Qlaira but only on the first pack TIA
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2024.11.28 09:50 sheesh3456hshs Why don't martin know Boyds name?

I got a theory that Boyd never entered fromville in his past life
Maybe that's why the monsters are trying to break him and not kill him cause he bringed the talismans and all and the monsters can't predict Boyds next move that's why there just trying to break him
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2024.11.28 09:50 Ancient-Ad2909 13th brigade "Khartia"

I've been heard bad things about kartia brigade, but on strategic they're successful unit. Does someone know more detail about khartia?
Many foreigners lefting there.
submitted by Ancient-Ad2909 to ukraineforeignlegion [link] [comments]


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